Angle-Curve Alignment (Version 0.1)
See a sample report
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Get 1st structure:
upload file (in PDB format)
or
provide PDB code
Chain
Name
Get 2nd structure:
upload file (in PDB format)
or
provide PDB code
Chain
Name
Gap opening penalty
Gap extension penalty
Matching reward
(Note 1: You can either upload local PDB files or simply provide PDB codes (eg. 1abo))
(Note 2: CURVE server will automatically download the PDB files from
RCSB
when PDB codes are provided)
(Note 3: If your PDB has more than one chain AND you do not want to use the 1st chain, please define the Chain; otherwise, the 1st chain will be used)
(Note 4: Type in "zero" instead of "0" for chain 0; the server won't recognize 0)
(Note 5: Make gap opening penalty and extension penalty equal for linear gap penalty))
(Note 6: Matching reward is the angle deviation at which the matching score equals zero.)
Other Servers
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Godzik Laboratory
|
The Burnham Institute
,
Contact:
CURVE